PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC019162.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 340aa    MW: 38562 Da    PI: 8.9534
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC019162.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.95e-158516515100
                   -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
            B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                    l +pk+f++++g++   s  + l+ + g +W vkl  +k++++ ++l kGW++F +   +  g  +vFk++g+s f  +v +f+ks
  EcC019162.20  85 VLGIPKSFLRRYGKD--LSGLVLLKVPGGSTWPVKL--EKSDDGkVWLWKGWQGFMEHYSIGHGHLLVFKYKGDSVF--HVIIFDKS 165
                   588*********977..7779***************..8887777****************************9999..**999985 PP

2B356.84e-18239331199
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   ffkv +++ + +++ l++p++f+ +h +k   +k++     s rsW+vkl  r +  +  l+ GW++F+++ gL  gD +vF+l++r++  ++v++f
  EcC019162.20 239 FFKVVVQPTYVRKS-LTIPREFFIKHVQK---NKQIATLRYSDRSWQVKL--RSHEHTACLSIGWSSFARETGLLLGDCCVFELIDRDDIVFRVSIF 329
                   89999999999998.***********544...23577777899*******..999999***************************999999999999 PP

                   -S CS
            B3  98 rk 99 
                   r+
  EcC019162.20 330 RS 331
                   96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.4E-212645IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.1E-1177165IPR003340B3 DNA binding domain
SuperFamilySSF1019361.29E-2084165IPR015300DNA-binding pseudobarrel domain
PfamPF023623.0E-1285164IPR003340B3 DNA binding domain
PROSITE profilePS5086312.54886165IPR003340B3 DNA binding domain
CDDcd100179.44E-1586163No hitNo description
Gene3DG3DSA:2.40.330.104.4E-2187165IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-24231333IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-21233332IPR015300DNA-binding pseudobarrel domain
CDDcd100173.91E-14238330No hitNo description
PROSITE profilePS5086312.633238332IPR003340B3 DNA binding domain
SMARTSM010194.1E-16239332IPR003340B3 DNA binding domain
PfamPF023622.7E-15239331IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGRRLRHRRR REGGGAEPEM DPGSPPSSPH FFKIVLSRAL ESGKLVSSSA LTVSLHTHHS  60
FSRNFRSCPP PPCASSFLNE LSLPVLGIPK SFLRRYGKDL SGLVLLKVPG GSTWPVKLEK  120
SDDGKVWLWK GWQGFMEHYS IGHGHLLVFK YKGDSVFHVI IFDKSASEID YPSSIESDMS  180
SPEEEFLSRK EEDVVEIKDS EGSMPCSRPS SYRSSREYGV PSLLAAFELA SEFKSEHPFF  240
KVVVQPTYVR KSLTIPREFF IKHVQKNKQI ATLRYSDRSW QVKLRSHEHT ACLSIGWSSF  300
ARETGLLLGD CCVFELIDRD DIVFRVSIFR SDGKNLIYVD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211RRLRHRRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052027.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A059CD820.0A0A059CD82_EUCGR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-20B3 family protein